• RNA-seq
  • 1 Proyecto
  • 2 Especificaciones:
  • 3 Proyecto escogido:
  • 4 Datos de SRP115956
  • 5 Limpieza de datos
  • 6 Normalización de datos
  • 7 Expresión diferencial
  • 8 Conclusiones
  • 9 Referencias
  • Published with bookdown

Proyecto final RNA-seq

Chapter 9 Referencias

Labonté, B., Engmann, O., Purushothaman, I., Menard, C., Wang, J., Tan, C., Scarpa, J. R., Moy, G., Loh, Y.-H. E., Cahill, M., Lorsch, Z. S., Hamilton, P. J., Calipari, E. S., Hodes, G. E., Issler, O., Kronman, H., Pfau, M., Obradovic, A. L. J., Dong, Y., … Nestler, E. J. (2017). Sex-specific transcriptional signatures in human depression. Nature Medicine, 23(9), 1102-1111.

Collado-Torres L (2021). Explore and download data from the recount3 project. doi: 10.18129/B9.bioc.recount3

Robinson MD, McCarthy DJ and Smyth GK (2010). edgeR: a Bioconductor package for differential expression analysis of digital gene expression data. Bioinformatics 26, 139-140

H. Wickham. ggplot2: Elegant Graphics for Data Analysis. Springer-Verlag New York, 2016.

Ritchie ME, Phipson B, Wu D, Hu Y, Law CW, Shi W, Smyth GK (2015). “limma powers differential expression analyses for RNA-sequencing and microarray studies.” Nucleic Acids Research, 43(7), e47. doi: 10.1093/nar/gkv007.

Raivo Kolde (2019). pheatmap: Pretty Heatmaps. R package version 1.0.12.

Erich Neuwirth (2014). RColorBrewer: ColorBrewer Palettes. R package version 1.1-2.